MItochondrial DNA regionalism and historical demography in the extant populations of Chirocephalus kerkyrensis (Branchiopoda: Anostraca)
Co-authored with: V. Ketmaier, G. Alfonso, K. Paulus, A. Wiemann, R. Tiedemann, G. Mura
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Seen by:Biogeography and variation of the Malaysian fruit bat, Cynopterus brachyotis, in Sunda Shelf 2003
Five more studies by BU, UKM & UNIMAS had tested and confirmed similar findings in this 2003 PhD study.
There are more then one species in the Malayan fruit bat, Cynopterus brachyotis, species complex based on the... more There are more then one species in the Malayan fruit bat, Cynopterus brachyotis, species complex based on the mophological and MtDNA cytochorome b analyses. The small form is found in the closed canopy forest while the larger form utilised the open habitat. There is a new species within the C. brachyotis populations yet to be described.
Next-Generation Phylogeography: A Targeted Approach for Multilocus Sequencing of Non-Model Organisms
by Jon Puritz
The field of phylogeography has long since realized the need and utility of incorporating nuclear DNA (nDNA) sequences... more The field of phylogeography has long since realized the need and utility of incorporating nuclear DNA (nDNA) sequences into analyses. However, the use of nDNA sequence data, at the population level, has been hindered by technical laboratory difficulty, sequencing costs, and problematic analytical methods dealing with genotypic sequence data, especially in non-model organisms. Here, we present a method utilizing the 454 GS-FLX Titanium pyrosequencing platform with the capacity to simultaneously sequence two species of sea star (Meridiastra calcar and Parvulastra exigua) at five different nDNA loci across 16 different populations of 20 individuals each per species. We compare results from 3 populations with traditional Sanger sequencing based methods, and demonstrate that this next-generation sequencing platform is more time and cost effective and more sensitive to rare variants than Sanger based sequencing. A crucial advantage is that the high coverage of clonally amplified sequences simplifies haplotype determination, even in highly polymorphic species. This targeted next-generation approach can greatly increase the use of nDNA sequence loci in phylogeographic and population genetic studies by mitigating many of the time, cost, and analytical issues associated with highly polymorphic, diploid sequence markers.
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A molecular phylogenetic appraisal of the systematics of the Aglaopheniidae (Cnidaria: Hydrozoa, Leptothecata) from the north-east Atlantic and west Mediterranean
by Carlos Moura
Moura et al. (2012c). Zoological Journal of the Linnean Society, 164, 717–727.
The hydrozoan family Aglaopheniidae (Cnidaria) is widespread worldwide and contains some of the most easily... more
The hydrozoan family Aglaopheniidae (Cnidaria) is widespread worldwide and contains some of the most easily recognizable hydroids because of their large colony size and characteristic microscopic structure. The systematics of the group has, however, been controversial and dedicated molecular analyses are lacking. We therefore analysed existing and new 16S rRNA sequences of Aglaopheniidae, in a total of 98 16S sequences corresponding to 25 putative species (25 nominal and three undescribed) from seven genera. The monophyly of the subfamilies Gymnangiinae and Aglaopheniinae, and tribes Aglaopheniini and Cladocarpini were not verified with 16S sequence data. The genera Gymnangium and Aglaophenia can only be considered valid if both Gymnangium gracicaule and Aglaophenia latecarinata are removed from their respective genera. The phenotypically similar Cladocarpus and Streptocaulus are probably monophyletic and clearly distinct genetically. The genus Lytocarpia may be polyphyletic. The nominal species Aglaophenia pluma, Aglaophenia tubiformis, and Aglaophenia octodonta are probably conspecific, as are also the species Aglaophenia acacia and Aglaophenia elongata. The 16S data revealed the existence of two potentially unnamed species of Aglaophenia respectively from the Azores and Madeira. The phylogeographical structure of the taxa with the greatest representation of haplotypes from the north-east Atlantic and Mediterranean, revealed the influence of Mediterranean waters in Madeira and the Azores, and gene flow between deep waters of the Mediterranean and Atlantic. The last glaciations in Europe may have caused genetic bottlenecks but also high intraspecific haplotype diversity. Finally, Macrorhynchia philippina was detected in samples from Madeira and possibly represents an invasive species.

