Cryptic diversity in disjunct populations of Middle American Montane Pitvipers: a systematic reassessment of Cerrophidion godmani
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Jadin, R.C., Townsend, J.H., Castoe, T.A. & Campbell, J.A. (2012). Cryptic diversity in disjunct populations of... more
Jadin, R.C., Townsend, J.H., Castoe, T.A. & Campbell, J.A. (2012). Cryptic diversity in disjunct populations of Middle American Montane Pitvipers: a systematic reassessment of Cerrophidion godmani. —Zoologica Scripta, 00, 000–000.
The discovery and taxonomic recognition of cryptic species has become increasingly frequent with the application of molecular phylogenetic analyses, particularly for species with broad geographic distributions. In this study we focus on the venomous pitviper species Cerrophidion godmani that is widely distributed throughout the highlands of Central America. We provide evidence based on both molecular phylogenetic analyses and morphological data that C. godmani represents three deeply divergent lineages and is possibly non-monophyletic. These three lineages are relatively conserved in their morphology and tend to be highly variable among individuals, but we do find sufficient morphological characters to diagnose them as evolutionarily distinct. We apply these data, together with known geographic distributions of populations, to infer boundaries of these three divergent evolutionary lineages. Based on the body of evidence, we formally name and describe two new species of Cerrophidion and redescribe C. godmani sensu stricto.
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Seen by:Phylogenetic relationships of the genus Sibynophis (Serpentes: Colubroidea)
Zaher, H., F.G. Grazziotin, R. Graboski, R.G. Fuentes, P. Sánchez-Martinez, G.G. Montingelli, Y.-P. Zhang, and R.W. Murphy. 2012. Phylogenetic relationships of the genus Sibynophis (Serpentes: Colubroidea). Papéis Avulsos de Zoologia 52(12): 141–149.
Redescription and morphological variation of Oxyrhopus clathratus Duméril, Bibron & Duméril, 1854 (Serpentes: Dipsadidae: Xenodontinae)
Bernardo, P.H., F.A. Machado, R.W. Murphy, and H. Zaher. In press pending minor revision. Redescription and morphological variation of Oxyrhopus clathratus Duméril, Bibron & Duméril, 1854 (Serpentes: Dipsadidae: Xenodontinae). South American Journal of Herpetology.
Experimental evidence that high population frequencies of lizard tail autotomy indicate inefficient predation. Oikos 1988.
Oikos 53: 321-324. 1988.
Co-authored with J.E. Jiménez, S.F. Fox & F.M. Jaksic.
Frequency of autotomized tails in lizard populations has been taken as an indicator of predation pressure upon those... more Frequency of autotomized tails in lizard populations has been taken as an indicator of predation pressure upon those populations. However, recent correlational evidence points to autotomy as reflecting lizards' escape efficiencies and/or predators' attack inefficiencies. We report experimental evidence on the relative inefficiencies of three predator species (a teiid, a snake, and a falcon) as autotomy-producin aggents, and on the relative escape efficiencies of three congeneric lizard species under laboratory conditions. The falcon was the least inefficient lizard predator (100% of successful attacks) whereas the teiid and snake were more inefficient (10-20% of the lizards escaped by autotomizing their tail). Lizards that successfully escaped predation by the widely-foraging teiid had relatively longer tails than unsuccessful ones. No difference in this feature was detected between successful and unsuccessful lizards a ttacked by the sit-and-wait snake. All three lizards pecies were equally efficient at escaping the three predators through tail autotomy. Our observed differences of comparative inefficiencies of lizard predators give experimental support to assertions that tail-loss frequencies do not adequately serve as indices of presumed predation pressure. High rates of tail-loss among lizard populations could instead reflect attempts at predation by inefficient predators.
Microhabitat shifts of lizards under different contexts of sympatry: a case study with South American Liolaemus. Oecologia 1988.
Oecologia 76: 567-569. 1988.
Co-authored with P.A. Marquet & F.M. jaksic.
The Iguanid lizard Liolaemus tenuis is shown to be a rock and trunk dweller (apparently preferring perches between... more
The Iguanid lizard Liolaemus tenuis is shown to be a rock and trunk dweller (apparently preferring perches between 0-30 cm height) in a central Chilean locality where it coexists with a single ground-dwelling congener. In its southern distributional ranges L. tenuis is sympatric with another tree-dweller, L. pictus. Habitat shift is demonstrated in this latter case by L. tenuis concentrating on tree trunks, and at modal heights 30-60 cm. Liolaemus pictus occupies lower (apparently more favorable) perches, actively interferring with its congener.
Next-generation DNA sequencing reveals evolutionary trends in microsatellite abundance in reptiles
Blair, C., V.H. Jiménez-Arcos, F.R. Méndez de la Cruz, and R.W. Murphy. In press. Next-generation DNA sequencing reveals evolutionary trends in microsatellite abundance in reptiles. Conservation Genetics Resources. COGR-D-12-01035R1.
Isolation and characterization of eleven novel polymorphic microsatellite loci in the spiny softshell turtle (Apalone spinifera)
Davy, C.M., I.M. Conflitti, D. Storisteanu, and R.W. Murphy. In press. Isolation and characterization of eleven novel polymorphic microsatellite loci in the spiny softshell turtle (Apalone spinifera). Conservation Genetics Resources. COGR1022.
Testing hypotheses of Pleistocene population history using coalescent simulations: refugial isolation and secondary contact in the Mongolian toad, Pseudepidalea raddei (Amphibia: Bufonidae)
Dong, B.-j. , J. Che, L. Ding, S. Huang, R.W. Murphy, E.-m. Zhao, and Y.-p. Zhang. In press. Testing hypotheses of Pleistocene population history using coalescent simulations: refugial isolation and secondary contact in the Mongolian toad, Pseudepidalea raddei (Amphibia: Bufonidae). Asian Herpetological Research.
Coalescence patterns in endemic Tibetan species of stream salamanders (Hynobiidae: Batrachuperus)
Lu, B., Y.-c. Zheng, R.W. Murphy, and X.-m. Zeng. In press. Coalescence patterns in endemic Tibetan species of stream salamanders (Hynobiidae: Batrachuperus). Molecular Ecology. DOI: 10.1111/j.1365-294X.2012.05606.x
Application of Genetics to Conservation of Canadian Reptiles
Andrew A. Chek, Kent A. Prior, David A. Galbraith, Stephen C. Lougheed. 2007. Herpetological Conservation 2:113-130 (Chapter 7)
Conservation genetics is principally concerned with 2 endeavours. The 1st approach uses genetic data to inform... more Conservation genetics is principally concerned with 2 endeavours. The 1st approach uses genetic data to inform questions centred on relationships among individuals, populations, species or higher-level taxa. Such questions may relate to connectivity among populations (gene flow) and the effects of past or present fragmentation events, forensic applications (animal or plant derivative identification) or the evolutionary affinities among taxa (phylogeny). The 2nd approach emphasizes quantification of genetic diversity at various hierarchical levels, to understand immediate (inbreeding) or future (ability to adapt to changing environments) consequences of reduced genetic variation. Relatively few populations of Canada’s 43 species of reptiles have been investigated using genetic techniques, which is unfortunate, because theory suggests these peripheral populations can harbour unique genetic variants, or be substantially genetically diverged from core populations. Examples from Canada and elsewhere can be used to illustrate some of the main sorts of inquiry within the 2 areas outlined above. Genetic markers have been useful in clarifying the bounds and affinities of reptile taxa and the related task of assessing the value of the taxon. Genetic markers can offer indirect measures of gene flow/migration between populations, although these estimates are ideally anchored by ecological assessments (mark-recapture, radiotelemetry studies). Gene flow/migration is important in determining the proportion of genetic variation unique to a given population. Perhaps more practically, the extent to which populations are genetically connected determines the scale and geographic bounds of management units and the likelihood that a given population can recolonize an area where a neighbouring population has been extirpated. Small population size is correlated with the loss of genetic variation (for example, through founder effect or genetic drift), which may impair the future adaptive capacity of a population or species as a whole. Small population size also results in inbreeding, which can lead to the accumulation of deleterious alleles that reduce fitness and make the population decline further. Other applications of genetic markers include their use in determining the sex of individuals, important when the species is monomorphic, where the species is difficult to handle, or where only a sample of the individual is available. Genetic markers are also of use for investigations of mating systems. Which and how many males and females breed in a population may have important consequences for wild management, captive breeding, or reintroduction measures. Finally, genetic markers may be applied for forensic purposes: establishing the provenance or identity of an individual or part thereof. The relatively small proportion of Canadian reptiles genetically investigated is not a reflection of inadequate laboratory capacity or expertise. Our experience suggests there is a willing supply of both geneticists and students eager to carry out such work; financial resources are more often the limiting factor. Where resources are available, we suggest 3 areas of study that could contribute to Canadian reptile conservation: taxonomic studies, particularly where species are marked by geographic variation in morphology, or where the distribution of species is discontinuous or spans very different environments; studies of the conservation value of peripheral populations; and using genetic information and GIS tools to assess the effect of habitat disturbance on population connectivity over relatively short time scales.
Population Genetic Structure of Aldabra Giant Tortoises
Oliver Balmer, Claudio Ciofi, David A. Galbraith, Ian R. Swingland, George R. Zug and Adalgisa Caccone. Journal of Heredity (2011) 102 (1): 29-37. doi:10.1093/jhered/esq096
Evolution of population structure on islands is the result of physical processes linked to volcanism, orogenic events,... more Evolution of population structure on islands is the result of physical processes linked to volcanism, orogenic events, changes in sea level, as well as habitat variation. We assessed patterns of genetic structure in the giant tortoise of the Aldabra atoll, where previous ecological studies suggested population subdivisions as a result of landscape discontinuity due to unsuitable habitat and island separation. Analysis of mitochondrial DNA (mtDNA) control region sequences and allelic variation at 8 microsatellite loci were conducted on tortoises sampled in 3 locations on the 2 major islands of Aldabra. We found no variation in mtDNA sequences. This pattern corroborated earlier work supporting the occurrence of a founding event during the last interglacial period and a further reduction in genetic variability during historical time. On the other hand, significant population structure recorded at nuclear loci suggested allopatric divergence possibly due to geographical barriers among islands and ecological partitions hindering tortoise movements within islands. This is the first attempt to study the population genetics of Aldabra tortoises, which are now at carrying capacity in an isolated terrestrial ecosystem where ecological factors appear to have a strong influence on population dynamics.
First record of Protobothrops jerdonii xanthomelas (Gunther, 1889) from Eaglenest Wildlife Sanctuary, India
Co-authored with Amod Zambre, Shashank Dalvi and Nirmal Kulkarni
We report a new subspecies of the Jerdon's Pitviper complex, for the Republic of India and comment on the possibility... more We report a new subspecies of the Jerdon's Pitviper complex, for the Republic of India and comment on the possibility of a much larger range than is currently known of this subspecies. This is a range extention of 1200 km from China.
Taxonomy, Hemipenial Morphology, and Natural History of Two Poorly Known Species of Anadia (Gymnophthalmidae) from Northern South America
Anadia pariaensis Rivas, La Marca and Oliveros, 1999 and A. steyeri Nieden, 1914 are two particularly rare and poorly... more Anadia pariaensis Rivas, La Marca and Oliveros, 1999 and A. steyeri Nieden, 1914 are two particularly rare and poorly known lizards described from single specimens. In the case of A. pariaensis, it remains known from the holotype; whereas A. steyeri is also known from three additional specimens reported in the literature after the original description of the species. A single new specimen of A. pariaensis and five of A. steyeri, including the first adult males recorded for both species, make possible a more representative description of both species, including also descriptions of the hemipenis. Despite both species presenting some similar morphological characteristics, the examination of the hemipenial morphology revealed very different organs. The hemipenis of A. steyeri, presents some characteristics that resemble the organs of two species from the Santa Marta Mountain Range in the "bitaeniata-group" (A. pulchella and A. altaserrania). On the other hand, the hemipenes of A. pariaensis is unique morphologically and cannot be currently associated with the hemipenes known from other species in the genus. We describe variation within both species, and we comment on possible sexual dimorphism (number and arrangement of the femoral pores), natural history and their known geographic distribution. We also comment on A. bumanguesa Rueda-Almonacid and Caicedo 2004 based on a new specimen available (the second known) and the new data suggest that this species could be a synonym or at least closely related to A. steyeri.
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